1. Cao, S.*, Wang, J. R.*, Ji, S.*, Yang, P., Dai, Y., Guo, S., et al. Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression. Nat. Biotechnol. 1–10 (2022). [read]
    *: contributed equally.
  2. Ji, S., Montierth, M. D. . & Wang, W. MuSE: A Novel Approach to Mutation Calling with Sample-Specific Error Modeling. Variant Calling. 21–27 (Springer, 2022). [read]
  3. Maniakas, A., Henderson, Y. C., Hei, H., Peng, S., Chen, Y., Jiang, Y., Ji, S., et al. Novel Anaplastic Thyroid Cancer PDXs and Cell Lines: Expanding Preclinical Models of Genetic Diversity. J. Clin. Endocrinol. Metab. 106, E4652–E4665 (2021). [read]
  4. Jiang, Y., Yu, K., Ji, S., Shin, S. J., Cao, S., Montierth, M. D., et al. CliP: subclonal architecture reconstruction of cancer cells in DNA sequencing data using a penalized likelihood model. bioRxiv 2021.03.31.437383 (2021) doi:10.1101/2021.03.31.437383. [read pre-print]
  5. Ji, S. Improving protein structure prediction using amino acid contact & distance prediction. (University of Birmingham, 2019). [read]
  6. Ji, S., Oruç, T., Mead, L., Rehman, M. F., Thomas, C. M., Butterworth, S., et al. DeepCDpred: Inter-residue distance and contact prediction for improved prediction of protein structure. PLoS One 14, e0205214 (2019). [read]
  7. Rajasekar, K. V., Ji, S., Coulthard, R. J., Ride, J. P., Reynolds, G. L., Winn, P. J., et al. Structure of SPH (self-incompatibility protein homologue) proteins: A widespread family of small, highly stable, secreted proteins. Biochem. J. 476, (2019). [read]
  8. Huang, X., Sun, L., Ji, S., Zhao, T., Zhang, W., Xu, J., et al. Kissing and nanotunneling mediate intermitochondrial communication in the heart. Proc. Natl. Acad. Sci. 110, 2846–2851 (2013). [read]
  9. Ji, S., Ye, C., Li, F., Sun, W., Zhang, J., Huang, Y., et al. Automatic segmentation of white matter hyperintensities by an extended FitzHugh & Nagumo reaction diffusion model. J. Magn. Reson. Imaging 37, 343–350 (2013). [read]
  10. Li, B., Dong, L., Chen, B. and Ji, S., Cai, W., Wang, Y., Zhang, J., Zhang, Z., Wang, X. and Fang, J. Turbo fast three-dimensional carotid artery black-blood MRI by combining three-dimensional MERGE sequence with compressed sensing. Magnetic resonance in medicine. 70, 1347-1352 (2013). [read]